Reads Stats


Input reads and filtering




Reads mean quality before filtering





Reads mean quality after filtering




rRNA removal

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##
## rRNA removal step was skipped
##
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Normalization

## 26918338 / 47970718 = 56.11% reads selected during normalization.
## 0 / 47970718 = 0.00% reads discarded as likely aberrant based on coverage profiles.
## 8 / 47970718 = 0.00% reads discarded as below minimum coverage threshold=1




  Assemblies Stats


Number of transcripts before Evidential Genes




Number of transcripts after Evidential Genes




Plot before and after Evidential Gene





Transcript length distribution




rnaQUAST




Mapping reads to EviGene results

82.12% overall alignment rate




Mapping reads to Trinity results

91.74% overall alignment rate






  BUSCO


- Using BUSCO V4







- BUSCO Distribution


BUSCO V4


Missing BUSCO distribution

##
## --------------------------------------------------------------
##
## BUSCO4 distribution analysis was skipped
##
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  ORFs


Summary of the Transdecoder run







  Gene Ontologies















  UniProt







  KEGG Pathways 



##              Pathways from annotation and iPATH